bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another. (by bioconvert)
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. (by google)
| bioconvert | deepvariant | |
|---|---|---|
| 1 | 5 | |
| 376 | 3,451 | |
| 0.0% | 1.4% | |
| 6.1 | 9.6 | |
| over 1 year ago | 2 months ago | |
| Python | Python | |
| GNU General Public License v3.0 only | BSD 3-clause "New" or "Revised" License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
bioconvert
Posts with mentions or reviews of bioconvert.
We have used some of these posts to build our list of alternatives
and similar projects.
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found a script in a file i was sent and I'm wondering what exactly it does.
Hmm, so this sed construct seems to be used in a project called "bioconvert" for compressing fasta files.
deepvariant
Posts with mentions or reviews of deepvariant.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-05-06.
- Look over my purchase, is there anything I should return?
- Welche Berufe haben ein riesiges Angebot an Arbeitskräften (zb. Marketing) und welche Berufe haben wirklich echten Fachkräftemangel und brauchen dringend mehr öffentliche Plattform?
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Give me your suggestions for papers with a Convolutional Neural Network in Bioinformatics
See https://www.nature.com/articles/nbt.4235 for the paper and https://github.com/google/deepvariant for the code.
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[D] Is deep learning having an impact in life sciences yet?
Deepvariant is a another example.
What are some alternatives?
When comparing bioconvert and deepvariant you can also consider the following projects:
malware-phylogeny - malware phylogeny for WSO web shell, Shellbot IRC bot and algorithm
slivar - genetic variant expressions, annotation, and filtering for great good.
DNABERT - DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
af2complex - Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
pestalotiopsis - Assembly and phylogentic analysis pipeline for draft genome of a Pestalotiopsis fungi.
scanpy - Single-cell analysis in Python. Scales to >100M cells.