bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data (by GoekeLab)
rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth. (by snakemake-workflows)
bambu | rna-seq-kallisto-sleuth | |
---|---|---|
1 | 1 | |
163 | 63 | |
1.2% | - | |
5.7 | 5.9 | |
5 days ago | 14 days ago | |
R | Python | |
GNU General Public License v3.0 only | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
bambu
Posts with mentions or reviews of bambu.
We have used some of these posts to build our list of alternatives
and similar projects.
rna-seq-kallisto-sleuth
Posts with mentions or reviews of rna-seq-kallisto-sleuth.
We have used some of these posts to build our list of alternatives
and similar projects.
-
qiime2 but for RNAseq data?
(repo is here: https://github.com/snakemake-workflows/rna-seq-kallisto-sleuth)
What are some alternatives?
When comparing bambu and rna-seq-kallisto-sleuth you can also consider the following projects:
drugfindR - Repository holding the code for the drugfindR R package
clustifyr - Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
TCGAbiolinks - TCGAbiolinks
drake - An R-focused pipeline toolkit for reproducibility and high-performance computing
rnaseq - RNA-seq analyses.
biomisc_R - command line bioinformatic scripts written in R
rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
reprex - Render bits of R code for sharing, e.g., on GitHub or StackOverflow.
targets - Function-oriented Make-like declarative workflows for R