GraphBin2 VS atlas

Compare GraphBin2 vs atlas and see what are their differences.

GraphBin2

☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs (by metagentools)
metagenomics binning contigs assembly-graphs overlapped-binning
Source Code
graphbin2.readthedocs.io
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atlas

ATLAS - Three commands to start analyzing your metagenome data (by metagenome-atlas)
metagenomics Annotation Snakemake Assembly genomic-binning functional-annotation taxonomic-classifications
Source Code
metagenome-atlas.github.io
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GraphBin2 atlas
1 2
27 348
- 1.7%
7.8 8.9
10 days ago 18 days ago
Python Python
BSD 3-clause "New" or "Revised" License BSD 3-clause "New" or "Revised" License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

GraphBin2

Posts with mentions or reviews of GraphBin2. We have used some of these posts to build our list of alternatives and similar projects.

atlas

Posts with mentions or reviews of atlas. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-23.

What are some alternatives?

When comparing GraphBin2 and atlas you can also consider the following projects:

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System

zarp - The Zavolab Automated RNA-seq Pipeline

chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake

eggnog-mapper - Fast genome-wide functional annotation through orthology assignment

bioinformatics - :microscope: Path to a free self-taught education in Bioinformatics!

biopython-coronavirus - Biopython Jupyter Notebook tutorial to characterize a small genome

GraphBin2 vs metaGEM atlas vs kraken-biom GraphBin2 vs kraken-biom atlas vs pypsa-eur atlas vs zarp atlas vs chipseq-smk-pipeline atlas vs eggnog-mapper atlas vs bioinformatics atlas vs biopython-coronavirus