Top 7 sequence-analysis Open-Source Projects

• seqtk

  8 1,318 5.1 C

  Toolkit for processing sequences in FASTA/Q formats

Project mention: Illumina adapters and quality trimming | /r/bioinformatics | 2023-07-04

seqtk: A lightweight and versatile tool for processing FASTQ and FASTA files. https://github.com/lh3/seqtk

• bioawk

  8 581 0.0 C

  BWK awk modified for biological data

Project mention: Bioawk: Awk Modified for Biological Data | news.ycombinator.com | 2024-03-31

• InfluxDB

  www.influxdata.com featured

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• biotite

  2 564 9.0 Python

  A comprehensive library for computational molecular biology

  

• seqan3

  1 389 8.9 C++

  The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

  

• readfq

  2 164 0.0 C

  Fast multi-line FASTA/Q reader in several programming languages

• protr

  1 51 7.4 R

  🧬 Toolkit for generating various numerical features of protein sequences

Project mention: protr VS seqinr - a user suggested alternative | libhunt.com/r/protr | 2024-05-05

• seqinr

  1 2 6.5 R

  Biological sequences retrieval and analysis

  

Project mention: protr VS seqinr - a user suggested alternative | libhunt.com/r/protr | 2024-05-05

• SaaSHub

  www.saashub.com featured

  SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

  

sequence-analysis related posts

• Bioawk: Awk Modified for Biological Data

  1 project | news.ycombinator.com | 31 Mar 2024

• Illumina adapters and quality trimming

  2 projects | /r/bioinformatics | 4 Jul 2023

• looking for a tool to filter non-coding regions/excise ORFs from a draft assembly

  2 projects | /r/bioinformatics | 15 Jun 2023

• Help with understanding awk code

  2 projects | /r/bash | 19 May 2023

• Any links to R-scripts for common NGS pipelines?

  2 projects | /r/bioinformatics | 11 May 2023

• Is BioAwk frequently used, or even useful?

  2 projects | /r/bioinformatics | 5 May 2023

• What are the most useful cutting edge tools I should learn for bioinformatics?

  3 projects | /r/bioinformatics | 26 Apr 2023
• A note from our sponsor - SaaSHub
  www.saashub.com | 19 May 2024

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