Dna

Open-source projects categorized as Dna
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Language: + Python + Rust + Jupyter Notebook + JavaScript + C++ + Go + TypeScript + Java + Nextflow + C
Topics: Bioinformatics Genomics Python sequencing Machine Learning
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Top 22 Dna Open-Source Projects

  • Biopython

    Official git repository for Biopython (originally converted from CVS)

    • Project mention: Invitación a proyecto - Biopython en Español | /r/devsarg | 2023-07-23

  • deepvariant

    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

    • Project mention: Look over my purchase, is there anything I should return? | /r/buildapc | 2023-05-06

  • InfluxDB

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  • galaxy

    Data intensive science for everyone.

    • Project mention: Need for GUIs for bioinformatic tools? | /r/bioinformatics | 2023-06-17

    Maybe it would help you to look at the galaxy project: GitHub main site

  • vg

    tools for working with genome variation graphs (by vgteam)

  • poly

    A Go package for engineering organisms.

    • Project mention: Looking for an Open Source project to participate in for Google Summer of Code | /r/golang | 2023-12-10

  • pyfaidx

    Efficient pythonic random access to fasta subsequences

  • nucleotide-transformer

    🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

    • Project mention: ResearchAgent: Iterative Research Idea Generation Using LLMs | news.ycombinator.com | 2024-04-20

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

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  • nextclade

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    • Project mention: Why does musl make my Rust code so slow? (2020) | news.ycombinator.com | 2023-12-12

  • pydna

    Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

  • DNAnalyzer

    Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools

    • Project mention: I'm approaching 1000 followers! | dev.to | 2023-06-13

    P.S. If you haven't checked out my latest project, DNAnalyzer, please do so! It's a groundbreaking open source tool that brings the power of machine learning to DNA analysis. You can find it on GitHub or read more about it here on dev.to. I would love to hear your feedback and suggestions on how to make it better and more useful for everyone.

  • hlatyping

    Precision HLA typing from next-generation sequencing data

  • orfipy

    Fast and flexible ORF finder

  • innit

    A roguelike game where you play a micro organism inside a larger organism!

  • Genetic-Trait-Detector

    This python script detects known traits in raw human genetic data.

    • Project mention: Python script detects traits in raw human genetic data | news.ycombinator.com | 2023-09-18

  • libdna

    ♥ Essential Functions for DNA Manipulation

  • genetic-origins-heatmap

    Use your DNA data (e.g. from 23andMe) to paint a global heatmap of your origins.

  • 13andGene

    A fun oracle for Eurogenes K13.

  • DIF

    "DNA IMAGE FOOTPRINT" The main idea is to convert a DNA sequence to an image to find any related sequences in the image with common algorithms (by MahdiKarimian)

  • dna_parser

    A Python module written in rust to encode DNA sequences for machine learning

    • Project mention: dna_parser : A Python package written in Rust to encode DNA sequences for machine learning. | /r/rust | 2023-05-17

    I started to work on a Python library written in Rust to encode DNA sequences (stored in the FASTA format) for machine learning applications. I recently released a first version even if the project is in a very early stage and things will be changed/upgraded/improved. dna_parser 0.1 can be easily installed with pip: pip install dna-parser

  • evolution

    Evolution simulation with dna (by orthizar)

  • DMXX-s-Eye-Colour-Project-v.2

    Public submissions to DMXX's Eye Colour Project (v.2) at Anthrogenica. Excludes submissions not containing data for every SNP in their panel.

  • rosalind

    Bioinformatics library for DNA, RNA and protein sequence analysis. Based on the exercises of Rosalind website.

  • SaaSHub

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Dna related posts

Index

What are some of the best open-source Dna projects? This list will help you:

Project Stars
1 Biopython 4,167
2 deepvariant 3,076
3 galaxy 1,313
4 vg 1,060
5 poly 649
6 pyfaidx 440
7 nucleotide-transformer 383
8 nextclade 199
9 pydna 152
10 DNAnalyzer 123
11 hlatyping 52
12 orfipy 46
13 innit 45
14 Genetic-Trait-Detector 29
15 libdna 20
16 genetic-origins-heatmap 4
17 13andGene 4
18 DIF 1
19 dna_parser 1
20 evolution 1
21 DMXX-s-Eye-Colour-Project-v.2 0
22 rosalind 0

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