- nucleotide-transformer VS enformer-pytorch
- nucleotide-transformer VS genomic-jamba
- nucleotide-transformer VS bioseq
- nucleotide-transformer VS retention
- nucleotide-transformer VS RWKV-LM
- nucleotide-transformer VS notebooks
- nucleotide-transformer VS LMFlow
- nucleotide-transformer VS EasyLM
- nucleotide-transformer VS deepvariant
- nucleotide-transformer VS transformers
Nucleotide-transformer Alternatives
Similar projects and alternatives to nucleotide-transformer
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SaaSHub
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enformer-pytorch
Discontinued Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch [GET https://api.github.com/repos/lucidrains/enformer-pytorch: 404 - Not Found // See: https://docs.github.com/rest]
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RWKV-LM
RWKV (pronounced RwaKuv) is an RNN with great LLM performance, which can also be directly trained like a GPT transformer (parallelizable). We are at RWKV-7 "Goose". So it's combining the best of RNN and transformer - great performance, linear time, constant space (no kv-cache), fast training, infinite ctx_len, and free sentence embedding.
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LMFlow
An Extensible Toolkit for Finetuning and Inference of Large Foundation Models. Large Models for All.
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EasyLM
Large language models (LLMs) made easy, EasyLM is a one stop solution for pre-training, finetuning, evaluating and serving LLMs in JAX/Flax.
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deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
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transformers
🤗 Transformers: the model-definition framework for state-of-the-art machine learning models in text, vision, audio, and multimodal models, for both inference and training.
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better nucleotide-transformer alternative or higher similarity.
nucleotide-transformer discussion
nucleotide-transformer reviews and mentions
Posts with mentions or reviews of nucleotide-transformer.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2024-12-07.
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Nucleotide Transformer: building robust foundation models for human genomics
Any given segment of DNA within a gene can classified as ignored, transcribed into RNA and spliced into another segment, can signal to start or end a splice, can signal the start or end of the protein, can be a regulatory switch for other parts of DNA, and more...
This LLM takes a DNA sequence and assigns probabilities for each of those classifications: https://github.com/instadeepai/nucleotide-transformer .
- ResearchAgent: Iterative Research Idea Generation Using LLMs
Stats
Basic nucleotide-transformer repo stats
2
907
7.3
6 months ago
instadeepai/nucleotide-transformer is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.
The primary programming language of nucleotide-transformer is Jupyter Notebook.
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