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Top 4 bacterium Open-Source Projects
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GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
NOTE:
The open source projects on this list are ordered by number of github stars.
The number of mentions indicates repo mentiontions in the last 12 Months or
since we started tracking (Dec 2020).
bacteria related posts
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Help/recommendations for whole genome sequence analysis
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Software to automatically detect SNP's between 2 or more genomes?
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Microbiome - would it be reasonable to assume that a bacterial contaminant (eg during library prep) would be the same isolate across contaminated samples?
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How to find sequence variations from contigs
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Sorting reads to references with high identity
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Bacteria taxonomy determination!URGENT!
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Inquiry regarding Snippy (by Seemann). My job has been running for more than 5 days with no update. Can anyone help me?
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A note from our sponsor - InfluxDB
www.influxdata.com | 31 May 2024
Index
What are some of the best open-source bacterium projects? This list will help you:
| Project | Stars | |
|---|---|---|
| 1 | snippy | 442 |
| 2 | GTDBTk | 443 |
| 3 | bakta | 402 |
| 4 | Scoary | 137 |
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