Python medical-imaging

Open-source Python projects categorized as medical-imaging
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Top 17 Python medical-imaging Projects

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  1. UNetPlusPlus

    [IEEE TMI] Official Implementation for UNet++

  2. CodeRabbit

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  3. medicaldetectiontoolkit

    The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

  4. dipy

    DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

  5. MONAILabel

    MONAI Label is an intelligent open source image labeling and learning tool.

  6. Medical-SAM2

    Medical SAM 2: Segment Medical Images As Video Via Segment Anything Model 2

    Project mention: Why 2024 Was the Best Year for Visual AI (So Far) | dev.to | 2024-12-27

    Almost everyone has heard of libraries like OpenCV, Pytorch, and Torchvision. But there have been incredible leaps and bounds in other libraries to help support new tasks that have helped push research even further. It would be impossible to thank each and every project and the thousands of contributors who have helped make the entire community better. MedSAM2 has been helping bring the awesomeness of SAM2 to the medical field, segmenting organs in a variety of medical imaging methods. Rerun has made it easier than ever to stream multimodal data for spatial and embodied AI.

  7. MedRAX

    MedRAX: Medical Reasoning Agent for Chest X-ray

    Project mention: MedRAX: Medical Reasoning Agent for Chest X-ray | news.ycombinator.com | 2025-02-28

  8. visvis

    Visvis - the object oriented approach to visualization

  9. SaaSHub

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  10. rt-utils

    A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

  11. platipy

    Processing Library and Analysis Toolkit for Medical Imaging in Python

  12. mammography_metarepository

    Meta-repository of screening mammography classifiers

  13. FedCV

    FedCV: An Industrial-grade Federated Learning Framework for Diverse Computer Vision Tasks

  14. causal-gen

    (ICML 2023) High Fidelity Image Counterfactuals with Probabilistic Causal Models

  15. 3d-multi-resolution-rcnn

    Official PyTorch implementaiton of the paper "3D Instance Segmentation Framework for Cerebral Microbleeds using 3D Multi-Resolution R-CNN."

  16. medicalAI

    Medical-AI is a AI framework specifically for Medical Applications https://aibharata.github.io/medicalAI/

  17. Brain-Tumor-Segmentation-And-Classification

    Brain Tumor Segmentation And Classification using artificial intelligence

  18. purple-mri

    Penn Utilities for Registration and ParcelLation of Ex vivo MRI

    Project mention: High resolution postmortem brain image analysis | news.ycombinator.com | 2024-10-25

    Url changed from https://github.com/Pulkit-Khandelwal/purple-mri, which points to this.

  19. Phantom

    Effective DICOM anonymization in Python (by cyrilzakka)

  20. SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

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Index

What are some of the best open-source medical-imaging projects in Python? This list will help you:

# Project Stars
1 UNetPlusPlus 2,397
2 medicaldetectiontoolkit 1,320
3 dipy 741
4 MONAILabel 671
5 Medical-SAM2 632
6 MedRAX 534
7 visvis 233
8 rt-utils 223
9 platipy 123
10 mammography_metarepository 67
11 FedCV 66
12 causal-gen 58
13 3d-multi-resolution-rcnn 25
14 medicalAI 19
15 Brain-Tumor-Segmentation-And-Classification 18
16 purple-mri 18
17 Phantom 4

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