medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images. (by MIC-DKFZ)
Add to my DEV experience Detection retina-unet object-detection mask-rcnn 3d-models Deep Learning retina-net deep-neural-networks Segmentation semantic-segmentation u-net 3d-mask-rcnn 3d-object-detection medical-imaging medical-image-processing medical-image-computing medical-image-analysis pytorch-deeplearning pytorch-cnn pytorch-implementation
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medicaldetectiontoolkit reviews and mentions

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  • 3D rcnn
    3 projects | /r/computervision | 7 Sep 2021
    Checkout https://github.com/MIC-DKFZ/medicaldetectiontoolkit, they have a recent 3d rcnn implementation. Their paper is a good start on the topic. Also have a look at nnDetection from the same group, it might provide some more leads. Hth
  • 3D Faster R-CNN for microscopy image analysis
    1 project | /r/deeplearning | 17 Mar 2021
    I'm doing research in the area of biomedical image processing using deep learning. At the moment, I'm focused in the detection of biological structures in 3D microscopy images. For this task I trained a Faster R-CNN architecture, however I noticed that while the training loss is decreasing the validation loss is high, doesn't decrease and sometimes oscillates. When I looked at the results, the bounding boxes in the training and validation sets were too small but located at random spots. At first I thought that I should adjust the size of the anchors, however, even after trying different anchor sizes the results didn't improve. I would like to know if anyone has experience in working with 3D Faster R-CNN that could help me with suggestions for this project. (btw, I'm using the code available in this repo). Thanks in advance.

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22 days ago

MIC-DKFZ/medicaldetectiontoolkit is an open source project licensed under Apache License 2.0 which is an OSI approved license.

The primary programming language of medicaldetectiontoolkit is Python.

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