topic-db VS typedb-bio

Compare topic-db vs typedb-bio and see what are their differences.

topic-db

TopicDB is a topic maps-based semantic graph store (using SQLite for persistence) (by brettkromkamp)
graph-database knowledge-management knowledge-graph Semantic Web topic-map knowledge-base linked-data python-library Sqlite3 sqlite3-database Python
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typedb-bio

TypeDB Bio: Biomedical Knowledge Graph (by typedb-osi)
Bioinformatics knowledge-graph knowledge-base drug-discovery biomedical knowledge-discovery
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topic-db typedb-bio
1 1
249 73
- -
1.7 4.6
9 days ago 9 months ago
Python Python
MIT License -
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

topic-db

Posts with mentions or reviews of topic-db. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-06-10.
  • Contextualise: Structured Thinking
    2 projects | /r/Python | 10 Jun 2021
    Contextualise is a simple but effective tool particularly suited for organising information-heavy projects and activities consisting of unstructured and widely diverse data and information resources: https://github.com/brettkromkamp/contextualise. Contextualise's main dependency is TopicDB, an open source topic maps-based graph store implemented in Python. The Contextualise web application is implemented with the Flask framework.

typedb-bio

Posts with mentions or reviews of typedb-bio. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-06-10.
  • How Roche Discovered Novel Potential Gene Targets with TypeDB
    2 projects | dev.to | 10 Jun 2021
    For this purpose, David built out a set of rules and schema in TypeQL. Below is just a very small excerpt of how such data can be modelled — taken from BioGrakn-Covid, a Vaticle community-led project by Konrad Mysliwiec (Data Science Software Engineer, Roche). Note that this is a selected schema; the full schema can be found within the BioGrakn-Covid schema file.

What are some alternatives?

When comparing topic-db and typedb-bio you can also consider the following projects:

grakn - TypeDB: the polymorphic database powered by types

rdflib - RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.

obsidian-garden - A knowledge management garden for https://obsidian.md, in which to grow your ideas

SchemaGPT - Python library for RDF Schemas generation from prompts using GPT-3 magic 🪄🪄🪄

pygraft - Configurable Generation of Synthetic Schemas and Knowledge Graphs at Your Fingertips

ckb - Contextual knowledge bases

codex - CoDEx: A set of knowledge graph Completion Datasets Extracted from Wikidata and Wikipedia

contextualise - Contextualise is an effective tool particularly suited for organising information-heavy projects and activities consisting of unstructured and widely diverse data and information resources

scispacy - A full spaCy pipeline and models for scientific/biomedical documents.

topic-db vs grakn typedb-bio vs grakn topic-db vs rdflib typedb-bio vs obsidian-garden topic-db vs SchemaGPT typedb-bio vs pygraft topic-db vs ckb typedb-bio vs codex topic-db vs contextualise typedb-bio vs ckb topic-db vs codex typedb-bio vs scispacy