tape
pypdb
tape | pypdb | |
---|---|---|
1 | 1 | |
620 | 294 | |
0.0% | - | |
0.0 | 5.4 | |
over 1 year ago | about 2 months ago | |
Python | Python | |
BSD 3-clause "New" or "Revised" License | MIT License |
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
tape
-
ProteinBERT: A universal deep-learning model of protein sequence and function
We evaluated based on downstream tasks (multiple supervised benchmarks, including 4 from TAPE), not the LM performance.
pypdb
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How to mass-download the PDB files from UniProt for a protein using python?
Biopython, PDB API, Someone's else's implemention.
What are some alternatives?
protein-bert-pytorch - Implementation of ProteinBERT in Pytorch
deepblast - Neural Networks for Protein Sequence Alignment
fashion-mnist - A MNIST-like fashion product database. Benchmark :point_down:
evodiff - Generation of protein sequences and evolutionary alignments via discrete diffusion models
beir - A Heterogeneous Benchmark for Information Retrieval. Easy to use, evaluate your models across 15+ diverse IR datasets.
BioJava - :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
EquiBind - EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
ProFET - ProFET: Protein Feature Engineering Toolkit for Machine Learning
hPDB - PDB parser in Haskell
text - Models, data loaders and abstractions for language processing, powered by PyTorch
protein_bert