Python proteomics

Open-source Python projects categorized as proteomics
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Topics: Python Transcriptomics protein-structure Pdb Machine Learning
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Top 3 Python proteomic Projects

  • pypdb

    A Python API for the RCSB Protein Data Bank (PDB)

  • mokapot

    Fast and flexible semi-supervised learning for peptide detection in Python

    • Project mention: Does anyone know a great guide/documentation explaining how to implement Percolator? | /r/proteomics | 2023-06-06

    Why not use MokaPot instead? It’s fundamentally a python installation of percolator. https://github.com/wfondrie/mokapot

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo

  • enrich_omics

    A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python proteomics related posts

  • Opinions on AlphaPept

    2 projects | /r/proteomics | 30 Oct 2022

  • A python package to perform gene enrichment analysis (Bioinformatics/ health data science)

    1 project | /r/coolgithubprojects | 20 Feb 2022

Index

What are some of the best open-source proteomic projects in Python? This list will help you:

Project Stars
1 pypdb 297
2 mokapot 37
3 enrich_omics 17

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