Top 5 Python protein-sequence Projects

tape

1 620 0.0 Python

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (by songlab-cal)
evodiff

1 415 8.9 Python

Generation of protein sequences and evolutionary alignments via discrete diffusion models

Project mention: What’s Next in Protein Design? Microsoft Researchers Introduce EvoDiff: A Groundbreaking AI Framework for Sequence-First Protein Engineering | /r/machinelearningnews | 2023-09-19

Github: https://github.com/microsoft/evodiff

InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
pypdb

1 292 5.4 Python

A Python API for the RCSB Protein Data Bank (PDB)
protein-bert-pytorch

2 137 0.0 Python

Implementation of ProteinBERT in Pytorch
deepblast

2 96 4.8 Python

Neural Networks for Protein Sequence Alignment

Project mention: [D] To all the machine learning engineers: most difficult model task/type you’ve ever had to work with? | /r/MachineLearning | 2023-07-03

WorkOS

workos.com sponsored

The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).