sjPlot
biomisc_R
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sjPlot
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plot selected terms from zero inflated negative binomial regression
Not really an answer, but you could mail the author or submit an issue on github.
- How does sjPlot calculate the variance?
biomisc_R
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Splitting multifast file into individual single fasta R
https://github.com/olgatsiouri1996/biomisc_R/blob/main/fasta_manipulation/split_multifasta_to_singlefasta.R this will help. I would recommend using sed to keep only the ids and not the full fasta headers
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how can I have R go through a fasta file opened with seqinr and run certain functions on each sequence?
https://github.com/olgatsiouri1996/biomisc_R/blob/main/sequence_statistics/calculate_biophysical_properties_multifasta.R this might help
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biomisc_R: a repository of command line bioinformatic scripts written in R
while R is a very beginner friendly and popular programming language in bioinformatic circles, there are not many repositories that contain command line scripts that can be easily used. Thats why I created biomisc_R a repository that contains scripts involved in single/multi-fasta/pdb file manipulations, sequence statistics and differential expression analysis. The scripts have been tested on windows 10 build 19041.985 and ubuntu 18.04 with R 3.6.3. if you have any questions and suggestions please let me know!
What are some alternatives?
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rhmmer - Simple R utilities for working with HMMER
renjin - JVM-based interpreter for the R language for the statistical analysis.
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expotools - Useful methods for Exposome research.
MicrobiomeStat - Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
tanya-data-viz - Personal data visualization side projects.