seq VS nimconf2021

Compare seq vs nimconf2021 and see what are their differences.

seq

A high-performance, Pythonic language for bioinformatics (by seq-lang)
Bioinformatics computational-biology Genomics programming-language Domain-specific language Compiler Python

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nimconf2021

Slides for Nimconf21 (by Araq)
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seq nimconf2021
15 1
634 5
- -
0.7 1.8
over 1 year ago over 2 years ago
C++ HTML
Apache License 2.0 -
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

seq

Posts with mentions or reviews of seq. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-09-20.

nimconf2021

Posts with mentions or reviews of nimconf2021. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-09-15.
  • Seq: A programming language for high-performance computational genomics
    9 projects | news.ycombinator.com | 15 Sep 2021
    Nim has had some success in genomics mainly thanks to the work of https://github.com/brentp

    Nim can be sold as a "A strongly-typed and statically-compiled high-performance Pythonic language" as Seq (although it is more than that and does not actually have as a goal to be Pythonic, see https://nim-lang.org/ or https://github.com/Araq/nimconf2021/blob/main/zennim.rst).

    Still, given the small size of Nim community and even smaller size of the genomics nim subcommunity, I would say it is not that odd that is not included in the benchmark. The existing nim genomics library might not even cover the functionalities requested by the benchmark.

What are some alternatives?

When comparing seq and nimconf2021 you can also consider the following projects:

Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).

bioconda-recipes - Conda recipes for the bioconda channel.

adam - ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

wyng-backup - Fast Time Machine-like backups for logical volumes & disk images

Biopython - Official git repository for Biopython (originally converted from CVS)

seq-genomics - Coursera Bioinformatics / Stepik Genome Sequencing with seq-lang

bowtie2 - A fast and sensitive gapped read aligner

seq vs Nim nimconf2021 vs bioconda-recipes seq vs adam nimconf2021 vs adam seq vs edlib nimconf2021 vs Nim seq vs wyng-backup nimconf2021 vs Biopython seq vs Biopython nimconf2021 vs seq-genomics seq vs bowtie2 seq vs seq-genomics