rosalind
Bioinformatics library for DNA, RNA and protein sequence analysis. Based on the exercises of Rosalind website. (by agusotto96)
pyfaidx
Efficient pythonic random access to fasta subsequences (by mdshw5)
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| rosalind | pyfaidx | |
|---|---|---|
| 1 | 1 | |
| 0 | 440 | |
| - | - | |
| 3.4 | 6.0 | |
| 12 months ago | 22 days ago | |
| Rust | Python | |
| - | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
rosalind
Posts with mentions or reviews of rosalind.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Problem: exhausting when statement with sealed interface and generics
You can have a look at the project I'm working on if you are interested :) https://github.com/agusotto96/rosalind
pyfaidx
Posts with mentions or reviews of pyfaidx.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-03-07.
-
Can anyone recommend notable examples of simple python projects with unit tests?
My package for indexing FASTA files has some extensive tests. Every time someone raised an issue I’d write a test to reproduce the issue and add it after I fix the code. This way I can test for regressions. https://github.com/mdshw5/pyfaidx
What are some alternatives?
When comparing rosalind and pyfaidx you can also consider the following projects:
Biopython - Official git repository for Biopython (originally converted from CVS)
biowasm - WebAssembly modules for genomics
ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers
reCOGnizer - A tool for domain based annotation with databases from the Conserved Domains Database
FastaParser - A Python FASTA file Parser and Writer.
sublime_text - Issue tracker for Sublime Text
CSIS - Code Safety Inspection Service
biomisc - collection of miscellaneous command line bioinformatic scripts