pyfaidx
FastaParser
pyfaidx | FastaParser | |
---|---|---|
1 | 1 | |
440 | 17 | |
- | - | |
6.0 | 4.4 | |
9 days ago | over 1 year ago | |
Python | Python | |
GNU General Public License v3.0 or later | GNU General Public License v3.0 only |
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pyfaidx
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Can anyone recommend notable examples of simple python projects with unit tests?
My package for indexing FASTA files has some extensive tests. Every time someone raised an issue I’d write a test to reproduce the issue and add it after I fix the code. This way I can test for regressions. https://github.com/mdshw5/pyfaidx
FastaParser
What are some alternatives?
Biopython - Official git repository for Biopython (originally converted from CVS)
vermin - Concurrently detect the minimum Python versions needed to run code
biowasm - WebAssembly modules for genomics
PyInstaller - Freeze (package) Python programs into stand-alone executables
ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers
pillow - Python Imaging Library (Fork)
reCOGnizer - A tool for domain based annotation with databases from the Conserved Domains Database
BorgBackup - Deduplicating archiver with compression and authenticated encryption.
sublime_text - Issue tracker for Sublime Text
pyparsing - Python library for creating PEG parsers [Moved to: https://github.com/pyparsing/pyparsing]
CSIS - Code Safety Inspection Service
biomisc - collection of miscellaneous command line bioinformatic scripts