rhmmer VS maftools

Compare rhmmer vs maftools and see what are their differences.

rhmmer

Simple R utilities for working with HMMER (by arendsee)
hmmer Bioinformatics
Source Code
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maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies. (by PoisonAlien)
maf-files cancer-genomics cancer-genome-atlas tcga Genomics Bioinformatics R
Source Code
bioconductor.org
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rhmmer maftools
1 3
14 417
- -
0.0 6.6
over 1 year ago 1 day ago
R R
MIT License MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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rhmmer

Posts with mentions or reviews of rhmmer. We have used some of these posts to build our list of alternatives and similar projects.

maftools

Posts with mentions or reviews of maftools. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-01-09.
  • MUtation data visulization in R
    1 project | /r/bioinformatics | 20 Jul 2021
    Have you tried to debug the error? The maftools repo on GitHub has an active issues section.
  • Function to change source code?
    2 projects | /r/Rlanguage | 9 Jan 2021
    Are you able to provide your R script with the data (or a small recreation) that you're using? That would be helpful in recreating what you're seeing and help determine if what's going on. You can always submit a (minimal, reproducible) example and explanation to the maintainers on the issues page -- which they may be able to help you diagnoses.

What are some alternatives?

When comparing rhmmer and maftools you can also consider the following projects:

Baltica - Baltica: integrated differential junction usage

TeamTeri - Bioinformatics on GCP, AWS or Azure

heatitup

TCGAbiolinks - TCGAbiolinks

biomisc_R - command line bioinformatic scripts written in R

go-feature-flag - GO Feature Flag is a simple, complete and lightweight self-hosted feature flag solution 100% Open Source. 🎛️

ermineR - R wrapper for ermineJ

getting-started-with-genomics-tools-and-resources - Unix, R and python tools for genomics and data science

bio-sequence

drugfindR - Repository holding the code for the drugfindR R package

rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

rhmmer vs Baltica maftools vs TeamTeri rhmmer vs heatitup maftools vs TCGAbiolinks rhmmer vs biomisc_R maftools vs go-feature-flag rhmmer vs ermineR maftools vs getting-started-with-genomics-tools-and-resources rhmmer vs bio-sequence maftools vs drugfindR rhmmer vs rBLAST