rhmmer VS ermineR

Compare rhmmer vs ermineR and see what are their differences.

rhmmer

Simple R utilities for working with HMMER (by arendsee)
hmmer Bioinformatics
Source Code
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ermineR

R wrapper for ermineJ (by PavlidisLab)
ogan-bio gene-sets Bioinformatics Genomics Biology enrichment-analysis
Source Code
pavlidislab.github.io
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rhmmer ermineR
1 1
14 6
- -
0.0 0.0
over 1 year ago over 1 year ago
R R
MIT License GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

rhmmer

Posts with mentions or reviews of rhmmer. We have used some of these posts to build our list of alternatives and similar projects.

ermineR

Posts with mentions or reviews of ermineR. We have used some of these posts to build our list of alternatives and similar projects.
  • Gene ontology of differentially expressed genes in R
    1 project | /r/bioinformatics | 4 Aug 2021
    I would recommend ermineJ as thier statistical approach is better suited to overcome issues with how GO is constructed and the imbalance in the sizes of GO terms (sizes meaning the number of genes assigned). They have a graphical, command line interface and an R package link

What are some alternatives?

When comparing rhmmer and ermineR you can also consider the following projects:

Baltica - Baltica: integrated differential junction usage

full_spectrum_bioinformatics - An open-access bioinformatics text

heatitup

biomisc_R - command line bioinformatic scripts written in R

orthologr - Genome wide orthology inference and dNdS estimation

maftools - Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

bio-sequence

rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

rhmmer vs Baltica ermineR vs full_spectrum_bioinformatics rhmmer vs heatitup ermineR vs Baltica rhmmer vs biomisc_R ermineR vs orthologr rhmmer vs maftools rhmmer vs bio-sequence rhmmer vs rBLAST