orthologr VS maftools

Compare orthologr vs maftools and see what are their differences.

orthologr

Genome wide orthology inference and dNdS estimation (by drostlab)
blast-searches orthology-inference comparative-genomics-studies Genomics sequence-alignments Blast comparative dnds-estimation codon-alignment R entire-genomes orthologous-genes biomartr species comparing-genomes genomics-studies retrieve-genomes comparative-genomics proteome sequence-alignment
Source Code
drostlab.github.io
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maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies. (by PoisonAlien)
maf-files cancer-genomics cancer-genome-atlas tcga Genomics Bioinformatics R
Source Code
bioconductor.org
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orthologr maftools
1 3
82 415
- -
7.3 6.6
7 months ago 22 days ago
R R
GNU General Public License v3.0 only MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

orthologr

Posts with mentions or reviews of orthologr. We have used some of these posts to build our list of alternatives and similar projects.

maftools

Posts with mentions or reviews of maftools. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-01-09.
  • MUtation data visulization in R
    1 project | /r/bioinformatics | 20 Jul 2021
    Have you tried to debug the error? The maftools repo on GitHub has an active issues section.
  • Function to change source code?
    2 projects | /r/Rlanguage | 9 Jan 2021
    Are you able to provide your R script with the data (or a small recreation) that you're using? That would be helpful in recreating what you're seeing and help determine if what's going on. You can always submit a (minimal, reproducible) example and explanation to the maintainers on the issues page -- which they may be able to help you diagnoses.

What are some alternatives?

When comparing orthologr and maftools you can also consider the following projects:

gggenomes - A grammar of graphics for comparative genomics

TeamTeri - Bioinformatics on GCP, AWS or Azure

awesome-R - A curated list of awesome R packages, frameworks and software.

rhmmer - Simple R utilities for working with HMMER

ggplot2 - An implementation of the Grammar of Graphics in R

TCGAbiolinks - TCGAbiolinks

ermineR - R wrapper for ermineJ

go-feature-flag - GO Feature Flag is a simple, complete and lightweight self-hosted feature flag solution 100% Open Source. 🎛️

getting-started-with-genomics-tools-and-resources - Unix, R and python tools for genomics and data science

drugfindR - Repository holding the code for the drugfindR R package

orthologr vs gggenomes maftools vs TeamTeri orthologr vs awesome-R maftools vs rhmmer orthologr vs ggplot2 maftools vs TCGAbiolinks orthologr vs ermineR maftools vs go-feature-flag maftools vs getting-started-with-genomics-tools-and-resources maftools vs drugfindR