mokapot
alfie
mokapot | alfie | |
---|---|---|
1 | 1 | |
37 | 7 | |
- | - | |
3.4 | 0.0 | |
3 months ago | about 2 years ago | |
Python | Python | |
Apache License 2.0 | GNU General Public License v3.0 only |
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mokapot
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Does anyone know a great guide/documentation explaining how to implement Percolator?
Why not use MokaPot instead? It’s fundamentally a python installation of percolator. https://github.com/wfondrie/mokapot
alfie
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Finding eukaryotic DNA in ~70 bins
If they're COI BINs: https://github.com/CNuge/alfie
What are some alternatives?
sage - Proteomics search & quantification so fast that it feels like magic
nni - An open source AutoML toolkit for automate machine learning lifecycle, including feature engineering, neural architecture search, model compression and hyper-parameter tuning.
alphapept - A modular, python-based framework for mass spectrometry. Powered by nbdev.
ludwig - Low-code framework for building custom LLMs, neural networks, and other AI models
dephell - :package: :fire: Python project management. Manage packages: convert between formats, lock, install, resolve, isolate, test, build graph, show outdated, audit. Manage venvs, build package, bump version.
ivy - The Unified AI Framework
dance - DANCE: a deep learning library and benchmark platform for single-cell analysis
ivy - The Unified Machine Learning Framework [Moved to: https://github.com/unifyai/ivy]
Pytorch - Tensors and Dynamic neural networks in Python with strong GPU acceleration