minimap2
sbts-aru
minimap2 | sbts-aru | |
---|---|---|
5 | 22 | |
1,688 | 92 | |
- | - | |
7.6 | 9.4 | |
10 days ago | 2 months ago | |
C | Shell | |
GNU General Public License v3.0 or later | GNU General Public License v3.0 or later |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
minimap2
-
Ask HN: Comment here about whatever you're passionate about at the moment
Interested as well! But the future is not so dark, things like e.g. https://github.com/lh3/minimap2 are a breath of fresh air.
-
BLAST 10,000 genes?
No experience with this maybe try minimap2(https://github.com/lh3/minimap2) if this doesn't work fall back on blast/blat
- Truncating genome fastas to just overlapping regions
-
Alignment of long reads to plasmid and generation of consensus sequence.
You can try minimap2 to align your long reads to your expected plasmid
-
Questions about WGS mapping
It sounds like the mapping wasn't very good, you might want to try minimap2 as it is a newer algorithm.
sbts-aru
-
Going in circles without a real-time clock
Unfortunately a Raspberry Pi is a bit ill suited for production environments. Id recommend an RTC module. Otherwise this might be helpful: https://github.com/hcfman/sbts-aru
-
Running a Raspberry Pi with a read-only root filesystem
If you install my sbts-aru project
https://github.com/hcfman/sbts-aru
It will shrink your partitions, add news and install one of these and set up a sub micro second system clock and an audio recorder suitable for sound localization with a single install command.
-
2024-03-01 listening in on the neighborhood
I recommend primo EM272 microphone capsules for use with https://github.com/hcfman/sbts-aru. They are high quality, very sensitive with high signal to noise ratio, lauded for nature recording use cases. They can be bought assembled for around 65 euros in the Netherlands. However these capsules are often found in much more expensive equipment.
-
Considerations for a long-running Raspberry Pi
My sound localizing Raspberry Pi installs a resilient base system as part of its install.
https://github.com/hcfman/sbts-aru
https://hackaday.com/2023/12/30/localizing-fireworks-launche...
With one command it for all Pi’s for both Raspbian and bookworm it:
* Shrinks the file system (Gee, how does it do that with just one disk ? ;-) )
-
Colorado wolf reintroduction to move forward as ranchers' legal effort fails
I have a sound localization project that can help with that
https://github.com/hcfman/sbts-aru
You need to be able to hear the sound from three or more recorders. And normally localization is better within the polygon of microphones but there’s an area of better localizability extending outside of a vertex.
-
Acoustic Location and Sound Mirrors
Interesting history!
And while we are in the subject of sound localizing may I take the liberty of introducing my new raspberry pi sound localizing audio recorder.
https://github.com/hcfman/sbts-aru
It installs with one command on all Raspberry Pi versions and synchronizes the system time to less than 1 microsecond of error with a cheap GPS.
With three of these I’ve been able to sound localize the explosions from illegal fireworks to a specific car park from more than 3km away with lots of houses in between.
When I got to the car park I could smell the sulphur from the fireworks.
This will even run on a Raspberry Pi zero running of a battery with a 6 euro neo 7m gps and a 6 euro usb mic.
-
AI tool helps ecologists monitor rare birds through their songs
Very nice tool!
So grab a spare Raspberry Pi, a GPS, a cheap USB sound card and a mic and get recording with this Pi based Acoustic Recording Unit
https://github.com/hcfman/sbts-aru
And while you are at it, install 3x or more and localize where the birds are.
-
Ask HN: Comment here about whatever you're passionate about at the moment
Sound localizing. I was intensely passionate about it when I saw the possibility to do it well on a Raspberry Pi. There were quite a few more problems than so expected which is why it took five months (of weekends) to complete it well.
But I’m super happy with the result and have a bunch of geeks with recording nodes setup a long distance apart. Localizing large explosions show that it’s possible to localize to a carpets even when some of the nodes are almost 5 away.
For those interested, here is the project:
https://github.com/hcfman/sbts-aru
- Localizing sound sources on a Pi anyone?
- Raspberry Pi based sound localizing audio recorder
What are some alternatives?
bwa-mem2 - The next version of bwa-mem
al-ahli-hospital-blast
seqtk - Toolkit for processing sequences in FASTA/Q formats
BirdNET-Pi - A realtime acoustic bird classification system for the Raspberry Pi 4B, 3B+, and 0W2 built on the TFLite version of BirdNET.
seqstats - Quick summary statistics on fasta/fastq(.gz) files
Bitgrid - Bitgrid - a new model of computation
slivar - genetic variant expressions, annotation, and filtering for great good.
random-ideas - random ideas
MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.
logseq-sync - An open-source Logseq Sync backend implementation
bwa-mem2 - The next version of bwa-mem
vimium - The hacker's browser.