minimap2
running_page
| minimap2 | running_page | |
|---|---|---|
| 5 | 3 | |
| 1,688 | 3,274 | |
| - | - | |
| 7.6 | 9.0 | |
| 10 days ago | 6 days ago | |
| C | Python | |
| GNU General Public License v3.0 or later | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
minimap2
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Ask HN: Comment here about whatever you're passionate about at the moment
Interested as well! But the future is not so dark, things like e.g. https://github.com/lh3/minimap2 are a breath of fresh air.
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BLAST 10,000 genes?
No experience with this maybe try minimap2(https://github.com/lh3/minimap2) if this doesn't work fall back on blast/blat
- Truncating genome fastas to just overlapping regions
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Alignment of long reads to plasmid and generation of consensus sequence.
You can try minimap2 to align your long reads to your expected plasmid
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Questions about WGS mapping
It sounds like the mapping wasn't very good, you might want to try minimap2 as it is a newer algorithm.
running_page
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Ask HN: Comment here about whatever you're passionate about at the moment
A resource recently shared in HN for running tech lovers https://github.com/yihong0618/running_page
- Running_page
What are some alternatives?
bwa-mem2 - The next version of bwa-mem
Strava-local-heatmap - Python script to generate a high resolution heatmap from Strava GPX files
seqtk - Toolkit for processing sequences in FASTA/Q formats
camp-viz - Camp Visualizer is a Python application that enables users to extract and store waypoint data from GPX files.
seqstats - Quick summary statistics on fasta/fastq(.gz) files
OctoPrint-GPX - An OctoPrint plug-in to use GPX as the protocol layer underneath rather than replacing g-code to talk to s3g/x3g machines, for example, a FlashForge.
slivar - genetic variant expressions, annotation, and filtering for great good.
Apache Superset - Apache Superset is a Data Visualization and Data Exploration Platform [Moved to: https://github.com/apache/superset]
MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.
strava-offline - Keep a local mirror of Strava activities for further analysis/processing
bwa-mem2 - The next version of bwa-mem
emurasoft.github.io - Sphinx project for https://www.emeditor.org/