minimap2
logseq-sync
| minimap2 | logseq-sync | |
|---|---|---|
| 5 | 1 | |
| 1,688 | 104 | |
| - | - | |
| 7.6 | 7.0 | |
| 10 days ago | 3 months ago | |
| C | Go | |
| GNU General Public License v3.0 or later | MIT License |
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minimap2
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Ask HN: Comment here about whatever you're passionate about at the moment
Interested as well! But the future is not so dark, things like e.g. https://github.com/lh3/minimap2 are a breath of fresh air.
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BLAST 10,000 genes?
No experience with this maybe try minimap2(https://github.com/lh3/minimap2) if this doesn't work fall back on blast/blat
- Truncating genome fastas to just overlapping regions
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Alignment of long reads to plasmid and generation of consensus sequence.
You can try minimap2 to align your long reads to your expected plasmid
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Questions about WGS mapping
It sounds like the mapping wasn't very good, you might want to try minimap2 as it is a newer algorithm.
logseq-sync
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Ask HN: Comment here about whatever you're passionate about at the moment
Building an open source sync backend for Logseq: https://github.com/bcspragu/logseq-sync
I'm a big fan of Logseq for keeping track of useful information and tasks and stuff, but the file-based (or Git-based) syncing has sharp edges, and the actual Logseq Sync feature has a proprietary backend, so I've been enjoying figuring out how the protocol works and building an OSS implementation.
What are some alternatives?
bwa-mem2 - The next version of bwa-mem
Bitgrid - Bitgrid - a new model of computation
seqtk - Toolkit for processing sequences in FASTA/Q formats
plots2 - a collaborative knowledge-exchange platform in Rails; we welcome first-time contributors! :balloon:
seqstats - Quick summary statistics on fasta/fastq(.gz) files
octo-termlib
slivar - genetic variant expressions, annotation, and filtering for great good.
cp-mod-ref-2019-patchwork
MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.
surge - Synthesizer plug-in (previously released as Vember Audio Surge)
bwa-mem2 - The next version of bwa-mem
vimium - The hacker's browser.