hgvs
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs` (by biocommons)
covid-19-signal
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19. (by jaleezyy)
| hgvs | covid-19-signal | |
|---|---|---|
| 1 | 1 | |
| 231 | 30 | |
| 1.3% | - | |
| 8.3 | 5.5 | |
| 7 days ago | about 1 month ago | |
| Python | Python | |
| Apache License 2.0 | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
hgvs
Posts with mentions or reviews of hgvs.
We have used some of these posts to build our list of alternatives
and similar projects.
-
[Question] How to transform HGVSg to HGVSp?
Python > https://github.com/biocommons/hgvs
covid-19-signal
Posts with mentions or reviews of covid-19-signal.
We have used some of these posts to build our list of alternatives
and similar projects.
-
What does a typical whole genome sequencing of SARS-CoV-2 fastq file look like?
For an example pipeline, check out SIGNAL - there is a workflow diagram in that repo https://github.com/jaleezyy/covid-19-signal
What are some alternatives?
When comparing hgvs and covid-19-signal you can also consider the following projects:
mixcr - MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
drep - Rapid comparison and dereplication of genomes
16SMaRT - 16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).
ariba - Antimicrobial Resistance Identification By Assembly
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.