hap.py
Haplotype VCF comparison tools (by Illumina)
Vcflib
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings (by vcflib)
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| hap.py | Vcflib | |
|---|---|---|
| 2 | - | |
| 392 | 595 | |
| 2.6% | 1.8% | |
| 0.0 | 2.6 | |
| 5 months ago | 4 days ago | |
| C++ | C++ | |
| GNU General Public License v3.0 or later | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
hap.py
Posts with mentions or reviews of hap.py.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Help running hap.py
I have been tasked with benchmarking a variant calling pipeline running hap.py as part of my bioinformatics MSc project.
- cream π
Vcflib
Posts with mentions or reviews of Vcflib.
We have used some of these posts to build our list of alternatives
and similar projects.
We haven't tracked posts mentioning Vcflib yet.
Tracking mentions began in Dec 2020.
What are some alternatives?
When comparing hap.py and Vcflib you can also consider the following projects:
megahit - Ultra-fast and memory-efficient (meta-)genome assembler
libsequence - libsequence: a C++ class library for evolutionary genetic analysis
GenomicSQLite - Genomics Extension for SQLite
SeqAn - SeqAn's official repository.
seq - A high-performance, Pythonic language for bioinformatics
Wham - Structural variant detection and association testing
truvari - Structural variant toolkit for VCFs
TileDB-VCF - Efficient variant-call data storage and retrieval library using the TileDB storage library.
gw - Genome browser and variant annotation
cellSNP - Pileup biallelic SNPs from single-cell and bulk RNA-seq data