hap.py vs gw

hap.py

Haplotype VCF comparison tools (by Illumina)

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gw

Genome browser and variant annotation (by kcleal)

annotation-tool Vcf bam-files cram-files genome-browser

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hap.py		gw
	Project
2	Mentions	2
392	Stars	123
2.6%	Growth	-
0.0	Activity	9.6
5 months ago	Latest Commit	about 2 months ago
C++	Language	C++
GNU General Public License v3.0 or later	License	MIT License

The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

hap.py

Posts with mentions or reviews of hap.py. We have used some of these posts to build our list of alternatives and similar projects.

Help running hap.py
1 project | /r/bioinformatics | 22 Nov 2022

I have been tasked with benchmarking a variant calling pipeline running hap.py as part of my bioinformatics MSc project.
cream π
1 project | /r/ProgrammerHumor | 8 Mar 2022

gw

Posts with mentions or reviews of gw. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-03-21.

Bam file genome viewing and whole chromosome plotting on a phone
2 projects | /r/bioinformatics | 21 Mar 2023

https://github.com/kcleal/gw/wiki/GW-on-Android if you still want to try

What are some alternatives?

When comparing hap.py and gw you can also consider the following projects:

megahit - Ultra-fast and memory-efficient (meta-)genome assembler

TileDB-VCF - Efficient variant-call data storage and retrieval library using the TileDB storage library.

GenomicSQLite - Genomics Extension for SQLite

constraints - Tools for programming with ConstraintKinds in GHC

seq - A high-performance, Pythonic language for bioinformatics

scat - Password scatterer. Eliminates password reuse by generating deterministically unique passwords for each service (website, email address, etc.), all from a single password.

truvari - Structural variant toolkit for VCFs

deeplabel - A cross-platform desktop image annotation tool for machine learning

Vcflib - C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

sbv - SMT Based Verification in Haskell. Express properties about Haskell programs and automatically prove them using SMT solvers.

yolo_annotation_tool - Annotation tool for YOLO in opencv