gw
Genome browser and variant annotation (by kcleal)
TileDB-VCF
Efficient variant-call data storage and retrieval library using the TileDB storage library. (by TileDB-Inc)
Our great sponsors
| gw | TileDB-VCF | |
|---|---|---|
| 2 | 4 | |
| 123 | 79 | |
| - | - | |
| 9.6 | 8.6 | |
| about 2 months ago | 3 days ago | |
| C++ | C++ | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
gw
Posts with mentions or reviews of gw.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-03-21.
-
Bam file genome viewing and whole chromosome plotting on a phone
https://github.com/kcleal/gw/wiki/GW-on-Android if you still want to try
TileDB-VCF
Posts with mentions or reviews of TileDB-VCF.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-11-12.
-
Has anyone stored/queried VCFs and their variant records in a relational database?
Perhaps of interest https://github.com/TileDB-Inc/TileDB-VCF
-
[TileDB webinar] Population genomics is a data management problem
Here are the docs to the open-source TileDB-VCF storage engine: https://docs.tiledb.com/main/integrations-and-extensions/population-genomics
What are some alternatives?
When comparing gw and TileDB-VCF you can also consider the following projects:
constraints - Tools for programming with ConstraintKinds in GHC
Hail - Cloud-native genomic dataframes and batch computing
scat - Password scatterer. Eliminates password reuse by generating deterministically unique passwords for each service (website, email address, etc.), all from a single password.
gwas2vcf - Convert GWAS summary statistics to VCF
deeplabel - A cross-platform desktop image annotation tool for machine learning
truvari - Structural variant toolkit for VCFs
sbv - SMT Based Verification in Haskell. Express properties about Haskell programs and automatically prove them using SMT solvers.
Vcflib - C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings