goatools
Python library to handle Gene Ontology (GO) terms (by tanghaibao)
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. (by google)
goatools | deepvariant | |
---|---|---|
2 | 5 | |
727 | 3,080 | |
- | 1.0% | |
5.0 | 9.1 | |
28 days ago | about 2 months ago | |
Python | Python | |
BSD 2-clause "Simplified" License | BSD 3-clause "New" or "Revised" License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
goatools
Posts with mentions or reviews of goatools.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Confused about gene name/id formats when doing enrichment with goatools
I'm trying to do enrichment analysis with goatools for the first time in my life, and I have no idea what I'm doing. (I'm a computer scientist with practically no bio background).
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Cytoscape & GO
I eventually moved on to use this: https://github.com/tanghaibao/goatools
deepvariant
Posts with mentions or reviews of deepvariant.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-05-06.
- Look over my purchase, is there anything I should return?
- Welche Berufe haben ein riesiges Angebot an Arbeitskräften (zb. Marketing) und welche Berufe haben wirklich echten Fachkräftemangel und brauchen dringend mehr öffentliche Plattform?
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Give me your suggestions for papers with a Convolutional Neural Network in Bioinformatics
See https://www.nature.com/articles/nbt.4235 for the paper and https://github.com/google/deepvariant for the code.
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[D] Is deep learning having an impact in life sciences yet?
Deepvariant is a another example.
What are some alternatives?
When comparing goatools and deepvariant you can also consider the following projects:
galaxy - Data intensive science for everyone.