getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science (by crazyhottommy)
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies. (by PoisonAlien)
| getting-started-with-genomics-tools-and-resources | maftools | |
|---|---|---|
| 2 | 3 | |
| 1,104 | 417 | |
| - | - | |
| 4.8 | 6.6 | |
| 5 days ago | 6 days ago | |
| Shell | R | |
| - | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
getting-started-with-genomics-tools-and-resources
Posts with mentions or reviews of getting-started-with-genomics-tools-and-resources.
We have used some of these posts to build our list of alternatives
and similar projects.
- Does pitt offer any r-programming courses for non-CS majors?
-
What are some of the best free software out there for exploratory bioinformaticians / aspiring synthetic biology researchers?
And, a much more comprehensive list of tools from a github contributor: https://github.com/crazyhottommy/getting-started-with-genomics-tools-and-resources
maftools
Posts with mentions or reviews of maftools.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-01-09.
-
MUtation data visulization in R
Have you tried to debug the error? The maftools repo on GitHub has an active issues section.
-
Function to change source code?
Are you able to provide your R script with the data (or a small recreation) that you're using? That would be helpful in recreating what you're seeing and help determine if what's going on. You can always submit a (minimal, reproducible) example and explanation to the maintainers on the issues page -- which they may be able to help you diagnoses.
What are some alternatives?
When comparing getting-started-with-genomics-tools-and-resources and maftools you can also consider the following projects:
manjaro-linux - Shell scripts for setting up Manjaro Linux for Python programming and deep learning
TeamTeri - Bioinformatics on GCP, AWS or Azure
scanpy - Single-cell analysis in Python. Scales to >1M cells.
rhmmer - Simple R utilities for working with HMMER
bioconda-recipes - Conda recipes for the bioconda channel.
TCGAbiolinks - TCGAbiolinks
biowasm - WebAssembly modules for genomics
go-feature-flag - GO Feature Flag is a simple, complete and lightweight self-hosted feature flag solution 100% Open Source. 🎛️
drugfindR - Repository holding the code for the drugfindR R package
metaflow-on-kubernetes-docs - Documentation For Running Metaflow on Kubernetes
dash - Data Apps & Dashboards for Python. No JavaScript Required.
getting-started-with-genomics-tools-and-resources vs manjaro-linux
maftools vs TeamTeri
getting-started-with-genomics-tools-and-resources vs scanpy
maftools vs rhmmer
getting-started-with-genomics-tools-and-resources vs bioconda-recipes
maftools vs TCGAbiolinks
getting-started-with-genomics-tools-and-resources vs biowasm
maftools vs go-feature-flag
getting-started-with-genomics-tools-and-resources vs TeamTeri
maftools vs drugfindR
getting-started-with-genomics-tools-and-resources vs metaflow-on-kubernetes-docs
getting-started-with-genomics-tools-and-resources vs dash