Top 7 Shell Bioinformatic Projects

bioconda-recipes

5 1,565 10.0 Shell

Conda recipes for the bioconda channel.
getting-started-with-genomics-tools-and-resources

2 1,058 4.8 Shell

Unix, R and python tools for genomics and data science
InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
juicer

1 375 10.0 Shell

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments (by aidenlab)
smk-simple-slurm

1 117 3.0 Shell

A simple Snakemake profile for Slurm without --cluster-config
Packages

4 79 10.0 Shell

Aim to be the bioinformatics repository with more and newer packages (by BioArchLinux)
TeamTeri

1 52 8.5 Shell

Bioinformatics on GCP, AWS or Azure
biozsh

2 32 1.9 Shell

the z in bioinformatics
WorkOS

workos.com sponsored

The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).