evodiff
deepblast
| evodiff | deepblast | |
|---|---|---|
| 1 | 2 | |
| 425 | 99 | |
| 5.9% | - | |
| 8.9 | 4.8 | |
| about 1 month ago | about 1 month ago | |
| Python | Python | |
| MIT License | BSD 3-clause "New" or "Revised" License |
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evodiff
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What’s Next in Protein Design? Microsoft Researchers Introduce EvoDiff: A Groundbreaking AI Framework for Sequence-First Protein Engineering
Github: https://github.com/microsoft/evodiff
deepblast
- [D] To all the machine learning engineers: most difficult model task/type you’ve ever had to work with?
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Strains clustering based on predicted protein genes.
Haven't tried it, but you could try running TM-vec / DeepBLAST -- where embedding vector distance is designed to approximate structural similarity. We're still polishing the API for large queries, but it is already pretty fast, so give it a shot. We tried to design it to be a drop-in replacement for BLAST.
What are some alternatives?
tape - Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
pypdb - A Python API for the RCSB Protein Data Bank (PDB)
protein-bert-pytorch - Implementation of ProteinBERT in Pytorch
MolecularNodes - Toolbox for molecular animations in Blender, powered by Geometry Nodes.
progen - Official release of the ProGen models
stylegan2-pytorch - Simplest working implementation of Stylegan2, state of the art generative adversarial network, in Pytorch. Enabling everyone to experience disentanglement
Biopython - Official git repository for Biopython (originally converted from CVS)
jukebox - Code for the paper "Jukebox: A Generative Model for Music"
denoising-diffusion-pytorch - Implementation of Denoising Diffusion Probabilistic Model in Pytorch