ermineR
R wrapper for ermineJ (by PavlidisLab)
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies. (by PoisonAlien)
| ermineR | maftools | |
|---|---|---|
| 1 | 3 | |
| 6 | 417 | |
| - | - | |
| 0.0 | 6.6 | |
| over 1 year ago | about 16 hours ago | |
| R | R | |
| GNU General Public License v3.0 or later | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
ermineR
Posts with mentions or reviews of ermineR.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Gene ontology of differentially expressed genes in R
I would recommend ermineJ as thier statistical approach is better suited to overcome issues with how GO is constructed and the imbalance in the sizes of GO terms (sizes meaning the number of genes assigned). They have a graphical, command line interface and an R package link
maftools
Posts with mentions or reviews of maftools.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-01-09.
-
MUtation data visulization in R
Have you tried to debug the error? The maftools repo on GitHub has an active issues section.
-
Function to change source code?
Are you able to provide your R script with the data (or a small recreation) that you're using? That would be helpful in recreating what you're seeing and help determine if what's going on. You can always submit a (minimal, reproducible) example and explanation to the maintainers on the issues page -- which they may be able to help you diagnoses.
What are some alternatives?
When comparing ermineR and maftools you can also consider the following projects:
full_spectrum_bioinformatics - An open-access bioinformatics text
TeamTeri - Bioinformatics on GCP, AWS or Azure
rhmmer - Simple R utilities for working with HMMER
Baltica - Baltica: integrated differential junction usage
TCGAbiolinks - TCGAbiolinks
orthologr - Genome wide orthology inference and dNdS estimation
go-feature-flag - GO Feature Flag is a simple, complete and lightweight self-hosted feature flag solution 100% Open Source. 🎛️
getting-started-with-genomics-tools-and-resources - Unix, R and python tools for genomics and data science
drugfindR - Repository holding the code for the drugfindR R package