enrich_omics
pypdb
| enrich_omics | pypdb | |
|---|---|---|
| 2 | 1 | |
| 17 | 297 | |
| - | - | |
| 3.6 | 5.4 | |
| 3 months ago | 2 months ago | |
| Python | Python | |
| MIT License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
enrich_omics
- A python package to perform gene enrichment analysis (Bioinformatics/ health data science)
-
Get enrichment results in python with enrich-omics!
Here's the link to the package on Github: https://github.com/saramasarone/enrich_omics!
pypdb
-
How to mass-download the PDB files from UniProt for a protein using python?
Biopython, PDB API, Someone's else's implemention.
What are some alternatives?
deepchem - Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
deepblast - Neural Networks for Protein Sequence Alignment
torchdrug - A powerful and flexible machine learning platform for drug discovery
evodiff - Generation of protein sequences and evolutionary alignments via discrete diffusion models
Biopython - Official git repository for Biopython (originally converted from CVS)
tape - Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
BioJava - :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
EquiBind - EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
hPDB - PDB parser in Haskell