eggnog-mapper vs atlas

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eggnog-mapper		atlas
	Project
1	Mentions	2
529	Stars	345
3.0%	Growth	2.6%
4.3	Activity	9.3
about 2 months ago	Latest Commit	2 months ago
Python	Language	Python
GNU Affero General Public License v3.0	License	BSD 3-clause "New" or "Revised" License

The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

eggnog-mapper

Posts with mentions or reviews of eggnog-mapper. We have used some of these posts to build our list of alternatives and similar projects.

Is there an easy way to us GO terms to identify known metabolic pathways from NCBI gene annotations
1 project | /r/bioinformatics | 7 Aug 2022

atlas

Posts with mentions or reviews of atlas. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-23.

Resources to learn genetic data manipulation basics?
3 projects | /r/bioinformatics | 23 Aug 2021
Is it possible to calculate relative abundance of microorganisms in a community through shotgun-metagenomics?
1 project | /r/bioinformatics | 26 Dec 2020

You might want to check Atlas, an assembly/binning based pipeline for metagenomics data Publication Github

What are some alternatives?

When comparing eggnog-mapper and atlas you can also consider the following projects:

ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

goatools - Python library to handle Gene Ontology (GO) terms

pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System

Hail - Cloud-native genomic dataframes and batch computing

GraphBin2 - ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

galaxy - Data intensive science for everyone.

zarp - The Zavolab Automated RNA-seq Pipeline

deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake

bioinformatics - :microscope: Path to a free self-taught education in Bioinformatics!

biopython-coronavirus - Biopython Jupyter Notebook tutorial to characterize a small genome