eggnog-mapper
deepvariant
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| eggnog-mapper | deepvariant | |
|---|---|---|
| 1 | 5 | |
| 529 | 3,076 | |
| 3.0% | 1.5% | |
| 4.3 | 9.1 | |
| about 2 months ago | about 1 month ago | |
| Python | Python | |
| GNU Affero General Public License v3.0 | BSD 3-clause "New" or "Revised" License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
eggnog-mapper
deepvariant
- Look over my purchase, is there anything I should return?
- Welche Berufe haben ein riesiges Angebot an Arbeitskräften (zb. Marketing) und welche Berufe haben wirklich echten Fachkräftemangel und brauchen dringend mehr öffentliche Plattform?
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Give me your suggestions for papers with a Convolutional Neural Network in Bioinformatics
See https://www.nature.com/articles/nbt.4235 for the paper and https://github.com/google/deepvariant for the code.
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[D] Is deep learning having an impact in life sciences yet?
Deepvariant is a another example.
What are some alternatives?
atlas - ATLAS - Three commands to start analyzing your metagenome data
galaxy - Data intensive science for everyone.
ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers
masurca
goatools - Python library to handle Gene Ontology (GO) terms
scanpy - Single-cell analysis in Python. Scales to >1M cells.
Hail - Cloud-native genomic dataframes and batch computing
transformers - 🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
Biopython - Official git repository for Biopython (originally converted from CVS)
af2complex - Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
slivar - genetic variant expressions, annotation, and filtering for great good.