cosmosR
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets. (by saezlab)
bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data (by GoekeLab)
cosmosR | bambu | |
---|---|---|
1 | 1 | |
53 | 163 | |
- | 1.2% | |
6.3 | 5.7 | |
5 months ago | 7 days ago | |
R | R | |
GNU General Public License v3.0 only | GNU General Public License v3.0 only |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
cosmosR
Posts with mentions or reviews of cosmosR.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Multi-omics integration and analysis tutorials
COSMOS: https://github.com/saezlab/cosmosR
bambu
Posts with mentions or reviews of bambu.
We have used some of these posts to build our list of alternatives
and similar projects.
What are some alternatives?
When comparing cosmosR and bambu you can also consider the following projects:
drugfindR - Repository holding the code for the drugfindR R package
rna-seq-kallisto-sleuth - A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
TCGAbiolinks - TCGAbiolinks
rnaseq - RNA-seq analyses.
rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
clustifyr - Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets