bowtie VS seq

Compare bowtie vs seq and see what are their differences.

bowtie

An ultrafast memory-efficient short read aligner (by BenLangmead)
Bioinformatics read-aligners Genomics C++
Source Code
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seq

A high-performance, Pythonic language for bioinformatics (by seq-lang)
Bioinformatics computational-biology Genomics programming-language Domain-specific language Compiler Python

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bowtie seq
1 15
252 634
- -
10.0 0.7
almost 2 years ago over 1 year ago
C++ C++
GNU General Public License v3.0 or later Apache License 2.0
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

bowtie

Posts with mentions or reviews of bowtie. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-09-24.

seq

Posts with mentions or reviews of seq. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-09-20.

What are some alternatives?

When comparing bowtie and seq you can also consider the following projects:

bwa - Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).

megahit - Ultra-fast and memory-efficient (meta-)genome assembler

adam - ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

nanopolish - Signal-level algorithms for MinION data

edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

wyng-backup - Fast Time Machine-like backups for logical volumes & disk images

Biopython - Official git repository for Biopython (originally converted from CVS)

bowtie2 - A fast and sensitive gapped read aligner

seq-genomics - Coursera Bioinformatics / Stepik Genome Sequencing with seq-lang

qore - Qore Programming Language

poly - A Go package for engineering organisms.

bowtie vs bwa seq vs Nim bowtie vs megahit seq vs adam bowtie vs nanopolish seq vs edlib seq vs wyng-backup seq vs Biopython seq vs bowtie2 seq vs seq-genomics seq vs qore seq vs poly