biowasm
pyfaidx
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| biowasm | pyfaidx | |
|---|---|---|
| 4 | 1 | |
| 189 | 440 | |
| 7.0% | - | |
| 8.9 | 6.0 | |
| 23 days ago | 23 days ago | |
| C | Python | |
| MIT License | GNU General Public License v3.0 or later |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
biowasm
- Biowasm ā Run C/C++ genomics tools in the browser
- Ask HN: What weird technical scene are you fond/part of?
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Show HN: I built interactive playgrounds for Awk, sed, grep using WebAssembly
Good morning HN! This tool lets you play with awk, grep, sed, and jq commands right in your browser. Start from the examples and explore from there!
To get these tools running in the browser, I compiled them to WebAssembly (see https://github.com/biowasm/biowasm for details). That way, the commands you type run instantaneously, and it doesn't cost me an arm and a leg to host servers that execute arbitrary commands from users :)
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Show HN: Learn Awk with a terminal running in the browser
Hello HN, this is an interactive awk tutorial that features a terminal in the browser to simulate the real experience.
To get it running in the browser, I compiled gawk from C to WebAssembly! If you're interested in how that was done, check out the biowasm project: https://github.com/biowasm/biowasm/tree/main/tools/gawk
pyfaidx
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Can anyone recommend notable examples of simple python projects with unit tests?
My package for indexing FASTA files has some extensive tests. Every time someone raised an issue Iād write a test to reproduce the issue and add it after I fix the code. This way I can test for regressions. https://github.com/mdshw5/pyfaidx
What are some alternatives?
wasm-fizzbuzz - WebAssembly from Scratch: From FizzBuzz to DooM.
Biopython - Official git repository for Biopython (originally converted from CVS)
astro - A fun safe language for rapid prototyping and high performance applications
ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers
awesome-wasm-langs - š A curated list of languages that compile directly to or have their VMs in WebAssembly
reCOGnizer - A tool for domain based annotation with databases from the Conserved Domains Database
aioli - Framework for building fast genomics web tools with WebAssembly and WebWorkers
FastaParser - A Python FASTA file Parser and Writer.
TeamTeri - Bioinformatics on GCP, AWS or Azure
sublime_text - Issue tracker for Sublime Text
timidity - Play MIDI files in the browser w/ Web Audio, WebAssembly, and libtimidity
CSIS - Code Safety Inspection Service