biowasm
minimap2
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| biowasm | minimap2 | |
|---|---|---|
| 4 | 5 | |
| 189 | 1,684 | |
| 7.0% | - | |
| 8.9 | 7.8 | |
| 23 days ago | 9 days ago | |
| C | C | |
| MIT License | GNU General Public License v3.0 or later |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
biowasm
- Biowasm – Run C/C++ genomics tools in the browser
- Ask HN: What weird technical scene are you fond/part of?
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Show HN: I built interactive playgrounds for Awk, sed, grep using WebAssembly
Good morning HN! This tool lets you play with awk, grep, sed, and jq commands right in your browser. Start from the examples and explore from there!
To get these tools running in the browser, I compiled them to WebAssembly (see https://github.com/biowasm/biowasm for details). That way, the commands you type run instantaneously, and it doesn't cost me an arm and a leg to host servers that execute arbitrary commands from users :)
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Show HN: Learn Awk with a terminal running in the browser
Hello HN, this is an interactive awk tutorial that features a terminal in the browser to simulate the real experience.
To get it running in the browser, I compiled gawk from C to WebAssembly! If you're interested in how that was done, check out the biowasm project: https://github.com/biowasm/biowasm/tree/main/tools/gawk
minimap2
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Ask HN: Comment here about whatever you're passionate about at the moment
Interested as well! But the future is not so dark, things like e.g. https://github.com/lh3/minimap2 are a breath of fresh air.
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BLAST 10,000 genes?
No experience with this maybe try minimap2(https://github.com/lh3/minimap2) if this doesn't work fall back on blast/blat
- Truncating genome fastas to just overlapping regions
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Alignment of long reads to plasmid and generation of consensus sequence.
You can try minimap2 to align your long reads to your expected plasmid
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Questions about WGS mapping
It sounds like the mapping wasn't very good, you might want to try minimap2 as it is a newer algorithm.
What are some alternatives?
wasm-fizzbuzz - WebAssembly from Scratch: From FizzBuzz to DooM.
bwa-mem2 - The next version of bwa-mem
astro - A fun safe language for rapid prototyping and high performance applications
seqtk - Toolkit for processing sequences in FASTA/Q formats
awesome-wasm-langs - 😎 A curated list of languages that compile directly to or have their VMs in WebAssembly
seqstats - Quick summary statistics on fasta/fastq(.gz) files
aioli - Framework for building fast genomics web tools with WebAssembly and WebWorkers
slivar - genetic variant expressions, annotation, and filtering for great good.
TeamTeri - Bioinformatics on GCP, AWS or Azure
MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.
timidity - Play MIDI files in the browser w/ Web Audio, WebAssembly, and libtimidity
bwa-mem2 - The next version of bwa-mem