biotite
dance
biotite | dance | |
---|---|---|
2 | 1 | |
557 | 323 | |
1.3% | 4.0% | |
9.0 | 8.7 | |
4 days ago | 5 days ago | |
Python | Python | |
BSD 3-clause "New" or "Revised" License | BSD 2-clause "Simplified" License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
biotite
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Journey into bioinformatics
For bioinformatics in Python, the BioPython library (https://biopython.org/) is commonly used. An alternative to this package is Biotite (https://www.biotite-python.org/), a package I am maintaining.
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What bioinformatics software can i give my contribute?
If you like programming in Python, you could contribute to Biotite (https://www.biotite-python.org/). You may have a look at the open issues at https://github.com/biotite-dev/biotite/issues or the projects at https://github.com/biotite-dev/biotite/projects. If you are interested in a project, you can get in contact via Mail or our Discord channel (https://discord.gg/cUjDguF).
dance
What are some alternatives?
Biopython - Official git repository for Biopython (originally converted from CVS)
Clairvoyante - Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
3DFI - The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
mlgauge - A simple library to benchmark the performance of machine learning methods across different datasets.
seqtk - Toolkit for processing sequences in FASTA/Q formats
haiku-geometric - A collection of graph neural networks implementations in JAX
mokapot - Fast and flexible semi-supervised learning for peptide detection in Python
CNApy - An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
alfie - A neural network for alignment-free, kingdom-level classification of eDNA