biomisc
collection of miscellaneous command line bioinformatic scripts (by olgatsiouri1996)
DnaChisel
:pencil2: A versatile DNA sequence optimizer (by Edinburgh-Genome-Foundry)
| biomisc | DnaChisel | |
|---|---|---|
| 2 | 2 | |
| 7 | 209 | |
| - | 1.9% | |
| 4.5 | 5.6 | |
| 5 months ago | 11 months ago | |
| Python | Python | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
biomisc
Posts with mentions or reviews of biomisc.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-04-06.
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Biopython quarry on protein sequencing
if you know witch exactly residues do you want to retrieve from your pdb you can use this: subset_pdb_to_fasta.py
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Extract sequences given FASTA + list of starts and ends?
i have made one with python: trim_fasta_by_coords.py. I have a newer version that deals with strands but since you work with proteins you don't need it
DnaChisel
Posts with mentions or reviews of DnaChisel.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Medical professionals, what is the stupidest misconception a patient has had about the human body?
There exists an algoritm and its implementation called DNA Chisel which can optimize viruses or bacteria computationally and it was used for example to replicate the BioNTech vaccine.
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Reverse Engineering Source Code of the Biontech Pfizer Vaccine: Part 2
How interesting. Was going through the top algorithm and it uses this library. Blows my mind that we have open source libraries to optimise dna sequences. Fascinating stuff.
What are some alternatives?
When comparing biomisc and DnaChisel you can also consider the following projects:
PDBaser - Protein preparation for MD, made faster and easier !
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
pyfaidx - Efficient pythonic random access to fasta subsequences
scanpy - Single-cell analysis in Python. Scales to >1M cells.
pycm - Multi-class confusion matrix library in Python
readfq - Fast multi-line FASTA/Q reader in several programming languages