biomisc
pycm
biomisc | pycm | |
---|---|---|
2 | 18 | |
7 | 1,431 | |
- | - | |
4.5 | 1.5 | |
5 months ago | 15 days ago | |
Python | Python | |
MIT License | MIT License |
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biomisc
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Biopython quarry on protein sequencing
if you know witch exactly residues do you want to retrieve from your pdb you can use this: subset_pdb_to_fasta.py
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Extract sequences given FASTA + list of starts and ends?
i have made one with python: trim_fasta_by_coords.py. I have a newer version that deals with strands but since you work with proteins you don't need it
pycm
- PyCM 4.0 Released: Multilabel Confusion Matrix Support
- PyCM 3.9 Released: Log-loss Support
- PyCM 3.8 Released: Distance/Similarity Support
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[P] PyCM 3.7 released: ROC curve and Precision-Recall curve are added
The complete change log of this version is available here.
- PyCM 3.7 Released: ROC/PR Curve Support
- PyCM 3.6 released: Multi-class confusion matrix library in Python
- PyCM 3.5 released: Multi-class confusion matrix library in Python
- PyCM 3.4 released: Multi-class confusion matrix library in Python
- [P] PyCM 3.3 released: Comparison of Classifiers Based on Confusion Matrix
What are some alternatives?
DnaChisel - :pencil2: A versatile DNA sequence optimizer
seq2seq - A general-purpose encoder-decoder framework for Tensorflow
PDBaser - Protein preparation for MD, made faster and easier !
spaCy - 💫 Industrial-strength Natural Language Processing (NLP) in Python
pyfaidx - Efficient pythonic random access to fasta subsequences
AI-Expert-Roadmap - Roadmap to becoming an Artificial Intelligence Expert in 2022
readfq - Fast multi-line FASTA/Q reader in several programming languages
InvoiceNet - Deep neural network to extract intelligent information from invoice documents.
pretty-print-confusion-matrix - Confusion Matrix in Python: plot a pretty confusion matrix (like Matlab) in python using seaborn and matplotlib
pyod - A Comprehensive and Scalable Python Library for Outlier Detection (Anomaly Detection)
mlnotify - 🔔 No need to keep checking your training - just one import line and you'll know the second it's done.
ANN-decompiler - "AI" demystified: a decompiler