asap VS tape

Compare asap vs tape and see what are their differences.

asap

Amino-Acid Sequence Annotation Predictor (ASAP) (by ddofer)
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Source Code
ncbi.nlm.nih.gov
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tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (by songlab-cal)
Deep Learning protein-sequences protein-structure semi-supervised-learning Benchmark language-modeling Dataset Pytorch
Source Code
biorxiv.org
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asap tape
1 1
25 620
- 0.0%
0.0 0.0
about 4 years ago over 1 year ago
Python Python
- BSD 3-clause "New" or "Revised" License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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asap

Posts with mentions or reviews of asap. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-05-30.
  • ProteinBERT: A universal deep-learning model of protein sequence and function
    4 projects | /r/bioinformatics | 30 May 2021
    That should be trivial for it, attention models are good for "feature X exists somewhere in the text"/ That said, if your feature is just the presence of some short motif, why not just use n-gram/k-mer features? Those are invariant to location, and super fast/simple. I did some packages in the past for that, specially for proteins (PROFET, ASAP(for residue level)).

tape

Posts with mentions or reviews of tape. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-05-30.

What are some alternatives?

When comparing asap and tape you can also consider the following projects:

protein_bert

protein-bert-pytorch - Implementation of ProteinBERT in Pytorch

fashion-mnist - A MNIST-like fashion product database. Benchmark :point_down:

beir - A Heterogeneous Benchmark for Information Retrieval. Easy to use, evaluate your models across 15+ diverse IR datasets.

evodiff - Generation of protein sequences and evolutionary alignments via discrete diffusion models

ProFET - ProFET: Protein Feature Engineering Toolkit for Machine Learning

text - Models, data loaders and abstractions for language processing, powered by PyTorch

pypdb - A Python API for the RCSB Protein Data Bank (PDB)

openfold - Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

ronin - RoNIN: Robust Neural Inertial Navigation in the Wild

asap vs protein_bert tape vs protein-bert-pytorch tape vs fashion-mnist tape vs beir tape vs evodiff tape vs ProFET tape vs text tape vs pypdb tape vs protein_bert tape vs openfold tape vs ronin