asap

Amino-Acid Sequence Annotation Predictor (ASAP) (by ddofer)

Asap Alternatives

Similar projects and alternatives to asap

  • tape

    1 asap VS tape

    Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (by songlab-cal)

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  • ProFET

    1 asap VS ProFET

    ProFET: Protein Feature Engineering Toolkit for Machine Learning

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better asap alternative or higher similarity.

asap reviews and mentions

Posts with mentions or reviews of asap. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-05-30.
  • ProteinBERT: A universal deep-learning model of protein sequence and function
    4 projects | /r/bioinformatics | 30 May 2021
    That should be trivial for it, attention models are good for "feature X exists somewhere in the text"/ That said, if your feature is just the presence of some short motif, why not just use n-gram/k-mer features? Those are invariant to location, and super fast/simple. I did some packages in the past for that, specially for proteins (PROFET, ASAP(for residue level)).

Stats

Basic asap repo stats
1
25
0.0
almost 4 years ago

The primary programming language of asap is Python.


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