ProFET Alternatives

Similar projects and alternatives to ProFET

protein_bert

2 453 6.0 Jupyter Notebook ProFET VS protein_bert
tape

1 620 0.0 Python ProFET VS tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (by songlab-cal)
InfluxDB

www.influxdata.com featured

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
asap

1 25 0.0 Python ProFET VS asap

Amino-Acid Sequence Annotation Predictor (ASAP)

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better ProFET alternative or higher similarity.

Suggest an alternative to ProFET

ProFET reviews and mentions

Posts with mentions or reviews of ProFET. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-05-30.

ProteinBERT: A universal deep-learning model of protein sequence and function
4 projects | /r/bioinformatics | 30 May 2021

That should be trivial for it, attention models are good for "feature X exists somewhere in the text"/ That said, if your feature is just the presence of some short motif, why not just use n-gram/k-mer features? Those are invariant to location, and super fast/simple. I did some packages in the past for that, specially for proteins (PROFET, ASAP(for residue level)).