alfie
mokapot
| alfie | mokapot | |
|---|---|---|
| 1 | 1 | |
| 7 | 38 | |
| - | - | |
| 0.0 | 3.4 | |
| about 2 years ago | 4 months ago | |
| Python | Python | |
| GNU General Public License v3.0 only | Apache License 2.0 |
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alfie
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Finding eukaryotic DNA in ~70 bins
If they're COI BINs: https://github.com/CNuge/alfie
mokapot
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Does anyone know a great guide/documentation explaining how to implement Percolator?
Why not use MokaPot instead? It’s fundamentally a python installation of percolator. https://github.com/wfondrie/mokapot
What are some alternatives?
nni - An open source AutoML toolkit for automate machine learning lifecycle, including feature engineering, neural architecture search, model compression and hyper-parameter tuning.
sage - Proteomics search & quantification so fast that it feels like magic
ludwig - Low-code framework for building custom LLMs, neural networks, and other AI models
alphapept - A modular, python-based framework for mass spectrometry. Powered by nbdev.
ivy - The Unified AI Framework
dephell - :package: :fire: Python project management. Manage packages: convert between formats, lock, install, resolve, isolate, test, build graph, show outdated, audit. Manage venvs, build package, bump version.
dance - DANCE: a deep learning library and benchmark platform for single-cell analysis
ivy - The Unified Machine Learning Framework [Moved to: https://github.com/unifyai/ivy]
Pytorch - Tensors and Dynamic neural networks in Python with strong GPU acceleration