UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al.. (by hms-dbmi)
ggsignif
Easily add significance brackets to your ggplots (by const-ae)
| UpSetR | ggsignif | |
|---|---|---|
| 4 | 1 | |
| 732 | 546 | |
| 0.7% | - | |
| 0.0 | 3.3 | |
| 3 months ago | 12 days ago | |
| R | R | |
| GNU General Public License v3.0 or later | GNU General Public License v3.0 only |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
UpSetR
Posts with mentions or reviews of UpSetR.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-06-05.
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Visually interesting pathway analysis?
Another package for Upset is UpSetR:: A shiny app is also available online. Complete info us available in their GitHub page.
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How does one create this kind of figure?
Those are good for up to 3 ~4 distinct groups but more than that you should take a peek at upset plots here
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Upset plots in Plotly/Dash?
Want this type of plot: https://github.com/hms-dbmi/UpSetR
- How might you display overlapping binary data other than a Venn diagram?
ggsignif
Posts with mentions or reviews of ggsignif.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Specifying significance brackets for comparisons
I think that most people likely do this outside of R (i.e. export their plot and add brackets in Illustrator). However, this looks like a straightforward package to add significance brackets and lets you specify exactly where to put them.
What are some alternatives?
When comparing UpSetR and ggsignif you can also consider the following projects:
complex-upset - A library for creating complex UpSet plots with ggplot2 geoms
tidyexplain - 🤹♀ Animations of tidyverse verbs using R, the tidyverse, and gganimate
ggvenn - Venn Diagram by ggplot2, with really easy-to-use API.
ggExtra - 📊 Add marginal histograms to ggplot2, and more ggplot2 enhancements