RapidFuzz
MACS
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| RapidFuzz | MACS | |
|---|---|---|
| 11 | 3 | |
| 2,348 | 683 | |
| 4.3% | 1.2% | |
| 9.2 | 9.4 | |
| 4 days ago | 14 days ago | |
| C++ | Cython | |
| MIT License | BSD 3-clause "New" or "Revised" License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
RapidFuzz
- RapidFuzz: Rapid fuzzy string matching in Python
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OVOS migration with docker containers ...
Tried it, but it fails here: RUN pip3 install git+https://github.com/maxbachmann/RapidFuzz
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Map columns from 2 data sources when colums are named differently
RapidFuzz has been the most promising fuzzy matcher in my findings with .cdist()
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finding common strings
RapidFuzz is a faster implementation.
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Pandas: How can I check if a DataFrame is a subset of another DataFrame? Ideal scenario would be to identify a match percentage instead of requiring an exact match
For fuzzy matching - there's Rapidfuzz.
- What packages replaced standard library modules in your workflow?
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Fuzzy search
There is also https://github.com/maxbachmann/RapidFuzz which uses the MIT license.
- can i use concurrent for this or is there a better way
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Finding the distance between two sentences that that share mostly the same words.
RapidFuzz
- Can you extract indexes of data over a threshold from numpy array or pandas dataframe?
MACS
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Can i cluster or PCA ChIP peak score from different TFs to see which TFs have similar targets?
Maybe not? Have a look at this: https://github.com/macs3-project/MACS/issues/123
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Big trouble installing macs2
Try making a conda env using their install instructions and then adding the package last (https://github.com/macs3-project/MACS/blob/master/docs/INSTALL.md). I haven't used this package before, but it looks finicky, so be patient trying to set it up on your system
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What is the meaning of the ATACseq score?
That’s a MACS2 narrowPeak file. You can see the file spec here: https://github.com/macs3-project/MACS/blob/master/docs/callpeak.md
What are some alternatives?
PolyFuzz - Fuzzy string matching, grouping, and evaluation.
Keras - Deep Learning for humans
fuzzywuzzy - Fuzzy String Matching in Python
uvloop - Ultra fast asyncio event loop.
string_grouper - Super Fast String Matching in Python
awesome-python - An opinionated list of awesome Python frameworks, libraries, software and resources.
strutil-go - Golang metrics for calculating string similarity and other string utility functions
ta-lib-python - Python wrapper for TA-Lib (http://ta-lib.org/).
go-edlib - 📚 String comparison and edit distance algorithms library, featuring : Levenshtein, LCS, Hamming, Damerau levenshtein (OSA and Adjacent transpositions algorithms), Jaro-Winkler, Cosine, etc...
PyAV - Pythonic bindings for FFmpeg's libraries.
OpenBBTerminal - Investment Research for Everyone, Everywhere.
thefuzz - Fuzzy String Matching in Python