MACS
MACS -- Model-based Analysis of ChIP-Seq (by macs3-project)
PyAV
Pythonic bindings for FFmpeg's libraries. (by PyAV-Org)
| MACS | PyAV | |
|---|---|---|
| 3 | 3 | |
| 682 | 2,281 | |
| 0.3% | 2.3% | |
| 9.4 | 9.2 | |
| 7 days ago | 3 days ago | |
| Cython | Cython | |
| BSD 3-clause "New" or "Revised" License | BSD 3-clause "New" or "Revised" License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
MACS
Posts with mentions or reviews of MACS.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Can i cluster or PCA ChIP peak score from different TFs to see which TFs have similar targets?
Maybe not? Have a look at this: https://github.com/macs3-project/MACS/issues/123
-
Big trouble installing macs2
Try making a conda env using their install instructions and then adding the package last (https://github.com/macs3-project/MACS/blob/master/docs/INSTALL.md). I haven't used this package before, but it looks finicky, so be patient trying to set it up on your system
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What is the meaning of the ATACseq score?
That’s a MACS2 narrowPeak file. You can see the file spec here: https://github.com/macs3-project/MACS/blob/master/docs/callpeak.md
PyAV
Posts with mentions or reviews of PyAV.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-09-22.
- Some Reasons to Avoid Cython
-
need advice on what frameworks to use w ffmpeg
Personally I would recommend using the PYAV bindings directly, if you want any sort of control over different codecs, profiles, pixel formats etc.
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[P] DeFFcode: A High-performance FFmpeg based Video-Decoder Python Library for fast and low-overhead decoding of a wide range of video streams into 3D NumPy frames.
There are a good amount of FFMPEG wrappers out there, decord, pyav, and MoviePy are probably the most popular. I'm sure all of these are fine, but they seem like they'd be best suited for something like a web backend for a startup that's getting off the ground or something else where latency isn't a huge issue.
What are some alternatives?
When comparing MACS and PyAV you can also consider the following projects:
RapidFuzz - Rapid fuzzy string matching in Python using various string metrics
decord - An efficient video loader for deep learning with smart shuffling that's super easy to digest
Keras - Deep Learning for humans
moviepy - Video editing with Python
uvloop - Ultra fast asyncio event loop.
deffcode - A cross-platform High-performance FFmpeg based Real-time Video Frames Decoder in Pure Python 🎞️⚡
awesome-python - An opinionated list of awesome Python frameworks, libraries, software and resources.
ta-lib-python - Python wrapper for TA-Lib (http://ta-lib.org/).
tenforce - Type enforcement for Python
QTVR - Tools for QTVR 1 files